PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_9A089DC10.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 327aa    MW: 38595.2 Da    PI: 8.7789
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_9A089DC10.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.85.7e-2620114191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 
                            +fYn+YA + GFsvrk + +  + n++i+ r++vCs+eg ree++ k   ++++r++r+ tr+gCkak+++ +   +g+w v+++  e
  Traes_4AL_9A089DC10.1  20 EFYNKYALQKGFSVRKGYVEWDEANEKIILRKLVCSREGCREEKHMKrkrEDRKRKPRNITRVGCKAKFVIARVAkTGRWFVKDFIDE 107
                            6*****************************************99988777889999***************99988************ PP

                   FAR1  85 HnHelap 91 
                            HnH+lap
  Traes_4AL_9A089DC10.1 108 HNHPLAP 114
                            ****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-2420114IPR004330FAR1 DNA binding domain
PfamPF105511.1E-35235326IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAEYDCIVSR MFDSEEEGFE FYNKYALQKG FSVRKGYVEW DEANEKIILR KLVCSREGCR  60
EEKHMKRKRE DRKRKPRNIT RVGCKAKFVI ARVAKTGRWF VKDFIDEHNH PLAPRDLSCF  120
LRSHRRISDE KKADIIEMES VGIKKHKIMD VLCMQYGGYD HVGCTTRDIY NFCHRYKQET  180
VAAGDAQAVI RHMMARQERD PDYFFKYLVD KAGHLKGLFW SDTQSRLDYE AFGDVVVFDS  240
TYRTNKYNLP FVPFVGLNHH RSTVIFGCGI ISHETNEAYE WMLRTFSEAM SQKHPISVIT  300
DGDLAMQRAI RVVWPDSYHR LCVWHIQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16774KREDRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231784.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5DRQ90.0W5DRQ9_WHEAT; Uncharacterized protein
STRINGBRADI2G37795.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-69FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]